About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_170538457_170541152_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
170538457 - 170541152
Intron Length:
2696

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTATTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
ATTATTGGAACT
Flanking Amino Acid:
RRHELVIAWEPVSEEFQNGE
Intron Amino Acid Position:
796

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
76.5
32.8
Major BPS
75.1
0.62
1
65.6
41
Major PPT
90.1
0.9
0.7
88.2
28.6
Minor 5ss
29.5
-2.3
3.5
40.1
46.3
Minor BPS
47.5
-0.1
2.1
71.37
39.7

Associated Gene:

Gene:
CNTN5
Ensembl Gene ID:
ENSAPLG00000013194
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013801
170513787 - 171065134
551348
ENSAPLT00000038521
170513787 - 171117977
604191
ENSAPLT00000037828
170513787 - 170811329
297543
ENSAPLT00000030904
170513787 - 171194530
680744