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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_170550574_170551731_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
170550574 - 170551731
Intron Length:
1158

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTACTGTCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAC
U12 Branch Point Sequence:
TATTTCTTTACT
Flanking Amino Acid:
FSLGWQTVKTVPDVISGDME
Intron Amino Acid Position:
722

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
82.1
24.6
Major BPS
74
0.6
1
65.6
41.1
Major PPT
79.2
0.66
0.9
73.4
36.8
Minor 5ss
27.3
-2.6
2.7
30.6
42.8
Minor BPS
74.6
0.86
1.5
88.74
35.7

Associated Gene:

Gene:
CNTN5
Ensembl Gene ID:
ENSAPLG00000013194
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030904
170513787 - 171194530
680744
ENSAPLT00000013801
170513787 - 171065134
551348
ENSAPLT00000038521
170513787 - 171117977
604191
ENSAPLT00000037828
170513787 - 170811329
297543