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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_170564768_170578469_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
170564768 - 170578469
Intron Length:
13702

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTGAT
5'SS Class:
major
3'SS Sequence:
ATCCCTGTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TAAACTTTAAAT
Flanking Amino Acid:
EGGHFESIKAQASSADLMIR
Intron Amino Acid Position:
629

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
75.5
34.3
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
76.2
0.59
0.9
72.8
36.8
Minor 5ss
36.5
-1.5
3.4
54.7
43.6
Minor BPS
65.7
0.57
1.4
76.56
39.2

Associated Gene:

Gene:
CNTN5
Ensembl Gene ID:
ENSAPLG00000013194
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037828
170513787 - 170811329
297543
ENSAPLT00000030904
170513787 - 171194530
680744
ENSAPLT00000013801
170513787 - 171065134
551348
ENSAPLT00000038521
170513787 - 171117977
604191