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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_170578646_170579335_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
170578646 - 170579335
Intron Length:
690

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGACAA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTATTTCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TGTTCTTTATCC
Flanking Amino Acid:
AEIIASVSVKEPTRIELTPK
Intron Amino Acid Position:
570

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
69.6
36.5
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
70.7
0.47
1.1
68.1
41.7
Minor 5ss
37.4
-1.4
3
47.2
48.2
Minor BPS
71.3
0.65
1.5
78.99
36.4

Associated Gene:

Gene:
CNTN5
Ensembl Gene ID:
ENSAPLG00000013194
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037828
170513787 - 170811329
297543
ENSAPLT00000030904
170513787 - 171194530
680744
ENSAPLT00000013801
170513787 - 171065134
551348
ENSAPLT00000038521
170513787 - 171117977
604191