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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_170656004_170675618_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
170656004 - 170675618
Intron Length:
19615

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CTAAACATTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
TTTTACTAAACA
Flanking Amino Acid:
TVKMECFALGNPVPTISWRK
Intron Amino Acid Position:
327

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
77.9
30
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
68.3
0.41
1
63.1
42.3
Minor 5ss
34.7
-1.7
3.2
41.8
38.8
Minor BPS
70.2
0.63
1.8
84.46
35.5

Associated Gene:

Gene:
CNTN5
Ensembl Gene ID:
ENSAPLG00000013194
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013801
170513787 - 171065134
551348
ENSAPLT00000038521
170513787 - 171117977
604191
ENSAPLT00000037828
170513787 - 170811329
297543
ENSAPLT00000030904
170513787 - 171194530
680744