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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_170675722_170690678_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
170675722 - 170690678
Intron Length:
14957

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGACAG
5'SS Class:
strong_major
3'SS Sequence:
CCTTATTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CGTTCCTTATTT
Flanking Amino Acid:
PPTPLTLRNDGVMGEYEPKI
Intron Amino Acid Position:
293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
64.3
41.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
84.5
0.78
0.8
76.2
37.5
Minor 5ss
31.4
-2.1
3.1
36.3
41.6
Minor BPS
68.7
0.66
1.6
80.47
41.8

Associated Gene:

Gene:
CNTN5
Ensembl Gene ID:
ENSAPLG00000013194
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013801
170513787 - 171065134
551348
ENSAPLT00000038521
170513787 - 171117977
604191
ENSAPLT00000037828
170513787 - 170811329
297543
ENSAPLT00000030904
170513787 - 171194530
680744