About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_170714324_170768103_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
170714324 - 170768103
Intron Length:
53780

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTGAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTAAAAT
U12 Branch Point Sequence:
TTGTTTTGAATA
Flanking Amino Acid:
LSREAVLQFAYLGNFSGRTR
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1
83.5
27.9
Major BPS
58.2
0.21
1.2
65.3
36.8
Major PPT
71.4
0.48
1
69.9
40.3
Minor 5ss
38.5
-1.3
2.8
50.4
39.3
Minor BPS
63.7
0.43
1.3
71.2
35.5

Associated Gene:

Gene:
CNTN5
Ensembl Gene ID:
ENSAPLG00000013194
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013801
170513787 - 171065134
551348
ENSAPLT00000038521
170513787 - 171117977
604191
ENSAPLT00000037828
170513787 - 170811329
297543
ENSAPLT00000030904
170513787 - 171194530
680744