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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_170775097_170783510_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
170775097 - 170783510
Intron Length:
8414

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
TCTATTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
ATTTTCAAAACT
Flanking Amino Acid:
YHFSEAFKHDESVNYGPVFV
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.9
79.8
35.3
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
81.1
0.7
0.8
76
32.5
Minor 5ss
37.9
-1.4
3
47.1
42.6
Minor BPS
59.7
0.38
1.9
82.93
38.1

Associated Gene:

Gene:
CNTN5
Ensembl Gene ID:
ENSAPLG00000013194
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037828
170513787 - 170811329
297543
ENSAPLT00000030904
170513787 - 171194530
680744
ENSAPLT00000013801
170513787 - 171065134
551348
ENSAPLT00000038521
170513787 - 171117977
604191