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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_170783730_170810808_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
170783730 - 170810808
Intron Length:
27079

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TATTTGTTAGTG
Flanking Amino Acid:
GRKVQFEETREYSEAVPGLP
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
1
88.2
26.7
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
92.9
0.97
0.7
92.3
26.6
Minor 5ss
33.8
-1.9
2.6
42.8
44.1
Minor BPS
47.9
-0.2
2.3
59.77
42.7

Associated Gene:

Gene:
CNTN5
Ensembl Gene ID:
ENSAPLG00000013194
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037828
170513787 - 170811329
297543