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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_170783730_170904561_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
170783730 - 170904561
Intron Length:
120832

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATCAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TATTTGTTAGTG
Flanking Amino Acid:
LFLSLTGSLSEYSEAVPGLP
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
76.5
34.2
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
92.9
0.97
0.7
92.3
26.6
Minor 5ss
32.9
-2
3
40.7
45.5
Minor BPS
47.9
-0.2
2.3
59.77
42.7

Associated Gene:

Gene:
CNTN5
Ensembl Gene ID:
ENSAPLG00000013194
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013801
170513787 - 171065134
551348
ENSAPLT00000038521
170513787 - 171117977
604191
ENSAPLT00000030904
170513787 - 171194530
680744