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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_171004032_171194432_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
171004032 - 171194432
Intron Length:
190401

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
CTATATATATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
74.6
37.4
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
88.1
0.86
0.8
80.8
36.8
Minor 5ss
34.4
-1.8
3.2
45.9
42.3
Minor BPS
44.5
-0.3
1.9
62.34
42.1

Associated Gene:

Gene:
CNTN5
Ensembl Gene ID:
ENSAPLG00000013194
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030904
170513787 - 171194530
680744