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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_17174808_17178870_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17174808 - 17178870
Intron Length:
4063

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TACTTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
ATACTTGTAACA
Flanking Amino Acid:
QPGGRIKTTTTEDQMEMS*
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
72.7
38.8
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
85.4
0.8
0.7
84.8
29.7
Minor 5ss
35
-1.7
2.9
45.5
42.6
Minor BPS
49.4
-0
2
63.43
36.8

Associated Gene:

Gene:
TAFA5
Ensembl Gene ID:
ENSAPLG00000029978
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021968
16820224 - 17178990
358767
ENSAPLT00000001248
16930610 - 17178990
248381