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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_17174808_17233182_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17174808 - 17233182
Intron Length:
58375

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTAATTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTATTTTTAATT
Flanking Amino Acid:
QPGGRIKTTT*
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
72.7
38.8
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
84
0.77
0.8
82.3
34
Minor 5ss
35
-1.7
2.9
45.5
42.6
Minor BPS
79
0.99
1
87.98
30.9

Associated Gene:

Gene:
TAFA5
Ensembl Gene ID:
ENSAPLG00000029978
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028741
16930258 - 17233185
302928