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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_17174808_17252501_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17174808 - 17252501
Intron Length:
77694

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGCCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATCAT
U12 Branch Point Sequence:
TATACCACAATA
Flanking Amino Acid:
QPGGRIKTTTPV*
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
72.7
38.8
Major BPS
80.4
0.76
1
80.3
31.8
Major PPT
87.9
0.85
0.7
85.6
29.1
Minor 5ss
35
-1.7
2.9
45.5
42.6
Minor BPS
51.3
0.04
1.8
67.22
38.7

Associated Gene:

Gene:
TAFA5
Ensembl Gene ID:
ENSAPLG00000029978
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027322
16984970 - 17252510
267541