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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_17174808_17253894_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17174808 - 17253894
Intron Length:
79087

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TATTGATTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTCTTATTGATT
Flanking Amino Acid:
QPGGRIKTTTVS*
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
72.7
38.8
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
80.5
0.69
0.9
73.3
40.8
Minor 5ss
35
-1.7
2.9
45.5
42.6
Minor BPS
62.2
0.47
1.6
79.34
37.1

Associated Gene:

Gene:
TAFA5
Ensembl Gene ID:
ENSAPLG00000029978
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035598
16820224 - 17254308
434085