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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_171810193_171812227_R

Intron Information:

Intron Rank:
147965
Intron Class:
major
Intron Phase:
Intron Coordinates:
171810193 - 171812227
Intron Length:
2035

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
ACTCCTTTCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TATTGCTTACTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
82.5
37
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
77.8
0.62
0.8
71.8
32
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
57.7
0.24
2
72.14
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026908
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046820
171809978 - 171813424
3447