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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_171810713_171812227_R

Intron Information:

Intron Rank:
147964
Intron Class:
major
Intron Phase:
Intron Coordinates:
171810713 - 171812227
Intron Length:
1515

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
ATTATTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
ATTATATTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
82.5
37
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
87.4
0.84
0.8
85.2
34.6
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
49.7
0.06
1.8
71.95
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026908
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036275
171810559 - 171813424
2866