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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_171867295_171867428_R

Intron Information:

Intron Rank:
130383
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
171867295 - 171867428
Intron Length:
134

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTGT
5'SS Class:
strong_major
3'SS Sequence:
AAACACTTTAAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
TGATCTAAAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.9
0.9
80.5
35
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
55.6
0.13
1.1
52.7
40.5
Minor 5ss
48
-0.2
2.5
67.3
43.8
Minor BPS
50.3
0.01
1.9
65.94
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017406
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029137
171866600 - 171867751
1152
ENSAPLT00000020298
171867220 - 171868768
1549