Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_171867494_171867639_R

Intron Information:

Intron Rank:

130388

Intron Class:

major

Intron Phase:

Intron Coordinates:

171867494 - 171867639

Intron Length:

146

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGCTTA

5'SS Class:

strong_major

3'SS Sequence:

TTATTTCATCAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTATTTCATC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.5

0.98

0.8

84.1

30.2

Major BPS

96.5

1.15

0.6

34.2

Major PPT

69.9

0.45

1.1

69.2

41.1

Minor 5ss

47.4

-0.3

2.8

64.4

Minor BPS

58.2

0.24

1.9

74.77

36.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017406

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029137

171866600 - 171867751

1152