Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_172036488_172038956_R

Intron Information:

Intron Rank:

137494

Intron Class:

major

Intron Phase:

Intron Coordinates:

172036488 - 172038956

Intron Length:

2469

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAAGCAAT

5'SS Class:

strong_major

3'SS Sequence:

TCTATATTCCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTCTAT

U12 Branch Point Sequence:

ATTTCTATATTC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.4

0.76

77.9

38.6

Major BPS

73.8

0.59

1.3

72.8

Major PPT

73.7

0.53

0.9

66.1

39.7

Minor 5ss

40.6

-1

2.9

49.4

46.6

Minor BPS

53.9

0.1

1.8

69.44

36.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021449

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025102

172026196 - 172039544

13349