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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_172114460_172118874_F

Intron Information:

Intron Rank:
134536
Intron Class:
major
Intron Phase:
Intron Coordinates:
172114460 - 172118874
Intron Length:
4415

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TCATATTTACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
78
38.6
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
88
0.85
0.8
85.4
34.1
Minor 5ss
38.7
-1.3
2.8
49.1
46.7
Minor BPS
56
0.27
1.8
73.34
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022317
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019539
172114121 - 172132116
17996