About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_172168730_172169807_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
172168730 - 172169807
Intron Length:
1078

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGATCA
5'SS Class:
major
3'SS Sequence:
TATTTCTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATT
Flanking Amino Acid:
SELLAYYIPQLSRCSPYVHF
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.1
64.3
36.4
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
89
0.88
0.7
81.3
36
Minor 5ss
40.2
-1.1
3
49.7
46.1
Minor BPS
84.9
1.17
0.8
94.97
24.6

Associated Gene:

Gene:
CCDC82
Ensembl Gene ID:
ENSAPLG00000004583
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004711
172167312 - 172180180
12869