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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_172169901_172171802_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
172169901 - 172171802
Intron Length:
1902

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTGCTGAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATGAT
U12 Branch Point Sequence:
TCTTGCTGAACA
Flanking Amino Acid:
IDDTFLNSLYDGTRQKKYAQ
Intron Amino Acid Position:
287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
75.8
0.64
1
65.8
41
Major PPT
69.6
0.44
1
65.5
39.9
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
63.5
0.42
1.9
76.11
41.2

Associated Gene:

Gene:
CCDC82
Ensembl Gene ID:
ENSAPLG00000004583
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004711
172167312 - 172180180
12869