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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_172179233_172179796_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
172179233 - 172179796
Intron Length:
564

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGACCA
5'SS Class:
strong_major
3'SS Sequence:
ATTTGATTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTCTATTTGATT
Flanking Amino Acid:
HLEDTGWIQERYNDLENYVN
Intron Amino Acid Position:
448

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
67
38.3
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
81
0.7
0.9
74.3
39.9
Minor 5ss
38.3
-1.3
3
48.9
46.8
Minor BPS
64.2
0.53
1.5
79.4
37.2

Associated Gene:

Gene:
CCDC82
Ensembl Gene ID:
ENSAPLG00000004583
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004711
172167312 - 172180180
12869