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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_172376003_172381439_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
172376003 - 172381439
Intron Length:
5437

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTTGTTTTAACA
Flanking Amino Acid:
VNMQQANQYPGGSPAVSMSS
Intron Amino Acid Position:
480

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
76
34.9
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
91.3
0.93
0.6
84.4
30.6
Minor 5ss
34.1
-1.8
3.1
41.9
38.9
Minor BPS
75.7
0.8
1.2
82.25
33.1

Associated Gene:

Gene:
MAML2
Ensembl Gene ID:
ENSAPLG00000004519
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004636
172319722 - 172382419
62698