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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_172445429_172445611_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
172445429 - 172445611
Intron Length:
183

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
CAACTGTCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CCTTTTTAAACT
Flanking Amino Acid:
YRLYFKSMERDPPFVLDASL
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1
78.8
38.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
69
0.43
1
61
39.7
Minor 5ss
49.3
-0
2.8
65.3
45.9
Minor BPS
60.4
0.4
1.7
74.22
43.6

Associated Gene:

Gene:
MTMR2
Ensembl Gene ID:
ENSAPLG00000004052
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004228
172403106 - 172465119
62014