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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_172445723_172447760_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
172445723 - 172447760
Intron Length:
2038

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTCCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACAAAT
U12 Branch Point Sequence:
TACAGTTTGACT
Flanking Amino Acid:
NSYGLEIVCKDIRNLRFAHK
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
90.3
22.3
Major BPS
60.7
0.27
1
65.3
28.1
Major PPT
82.5
0.73
0.7
77.1
31.6
Minor 5ss
45.5
-0.5
3
66.9
44.4
Minor BPS
50.7
0.1
1.8
68.27
42.9

Associated Gene:

Gene:
MTMR2
Ensembl Gene ID:
ENSAPLG00000004052
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004228
172403106 - 172465119
62014