About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_172448775_172456501_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
172448775 - 172456501
Intron Length:
7727

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAC
U12 Branch Point Sequence:
TGTTTGCTAACC
Flanking Amino Acid:
YDPIWEYRRQGIPNESWRLT
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.7
84
26.7
Major BPS
69.4
0.48
1.1
69.6
35.5
Major PPT
87.7
0.85
0.7
85.4
29.3
Minor 5ss
31.6
-2.1
2.6
37.4
40
Minor BPS
50.3
-0
2.3
71.44
39.6

Associated Gene:

Gene:
MTMR2
Ensembl Gene ID:
ENSAPLG00000004052
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004228
172403106 - 172465119
62014