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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_172456652_172457443_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
172456652 - 172457443
Intron Length:
792

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTGCA
5'SS Class:
major
3'SS Sequence:
TTTGTTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTTCCCTCATT
Flanking Amino Acid:
ASFRSRGRIPVLSWIHPESQ
Intron Amino Acid Position:
271

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1
65.2
34.5
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
84.8
0.78
0.8
80.2
32
Minor 5ss
29.7
-2.3
3.1
38.1
40.6
Minor BPS
64.1
0.52
2.1
88.6
36.6

Associated Gene:

Gene:
MTMR2
Ensembl Gene ID:
ENSAPLG00000004052
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004228
172403106 - 172465119
62014