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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_172459912_172461264_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
172459912 - 172461264
Intron Length:
1353

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GAGTGAC
U12 Branch Point Sequence:
CCCTGAGTGACT
Flanking Amino Acid:
WLSFGHRFQLRVGHGDKNHA
Intron Amino Acid Position:
465

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
76.2
28.3
Major BPS
48.3
-0.1
1.3
40.8
41.4
Major PPT
79.3
0.66
0.9
76.4
37.7
Minor 5ss
35.2
-1.7
2.8
40.3
40.2
Minor BPS
39.5
-0.7
2.5
55.32
47.1

Associated Gene:

Gene:
MTMR2
Ensembl Gene ID:
ENSAPLG00000004052
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004228
172403106 - 172465119
62014