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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_172469210_172470656_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
172469210 - 172470656
Intron Length:
1447

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
GCTTCTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAG
U12 Branch Point Sequence:
CTTGTTTCAGTT
Flanking Amino Acid:
ISKVRRHWLQLERLKRECKP
Intron Amino Acid Position:
442

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.7
83.6
22.5
Major BPS
58.3
0.21
1.7
71.4
45.1
Major PPT
83.8
0.76
0.8
80.8
31.2
Minor 5ss
35
-1.7
2.8
42.9
44.7
Minor BPS
45.8
-0.2
1.8
62.72
42.7

Associated Gene:

Gene:
CEP57
Ensembl Gene ID:
ENSAPLG00000003812
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003939
172468490 - 172484221
15732