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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_172471730_172472040_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
172471730 - 172472040
Intron Length:
311

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTGC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TGTCATTTAAAA
Flanking Amino Acid:
LGDVPFVAGKSTSPSHSVGA
Intron Amino Acid Position:
312

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
69.2
38.5
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
89
0.88
0.7
81.1
30.9
Minor 5ss
38.8
-1.3
3
50.2
46.4
Minor BPS
57.3
0.23
1.6
68.32
37.1

Associated Gene:

Gene:
CEP57
Ensembl Gene ID:
ENSAPLG00000003812
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003939
172468490 - 172484221
15732