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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_172473496_172476988_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
172473496 - 172476988
Intron Length:
3493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCTGTCAC
5'SS Class:
major
3'SS Sequence:
CACCTTTGACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTCACC
Flanking Amino Acid:
RLTTMQSIAEKKMKELEQKL
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.3
65
41.2
Major BPS
100
1.24
0.5
100
0
Major PPT
60.1
0.23
1
54.5
39.9
Minor 5ss
36
-1.6
2.7
44.2
43.6
Minor BPS
67.4
0.53
2
83.79
35.6

Associated Gene:

Gene:
CEP57
Ensembl Gene ID:
ENSAPLG00000003812
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003939
172468490 - 172484221
15732