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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_172478094_172478387_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
172478094 - 172478387
Intron Length:
294

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGCTTGC
5'SS Class:
major
3'SS Sequence:
TTGTTACCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
GCCTTGTTACCT
Flanking Amino Acid:
DRTEVSKKNQELASQLAAAE
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.2
0.41
1.2
60.1
41.9
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
80.6
0.69
0.9
74.1
35.7
Minor 5ss
39.2
-1.2
3.1
52.5
44.7
Minor BPS
46.4
-0.2
2.3
63.23
47.2

Associated Gene:

Gene:
CEP57
Ensembl Gene ID:
ENSAPLG00000003812
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003939
172468490 - 172484221
15732