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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_172478568_172481548_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
172478568 - 172481548
Intron Length:
2981

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGCTT
5'SS Class:
strong_major
3'SS Sequence:
TGCTCAATTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAA
U12 Branch Point Sequence:
CCTTGCTCAATT
Flanking Amino Acid:
VIPYPESNSRAIFSALKNLQ
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
75.3
40.4
Major BPS
74.6
0.61
1
65.6
41.4
Major PPT
73.7
0.53
0.9
66
38.7
Minor 5ss
36.8
-1.5
3.5
56.4
47.8
Minor BPS
53.4
0.19
2
71.5
46

Associated Gene:

Gene:
CEP57
Ensembl Gene ID:
ENSAPLG00000003812
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003939
172468490 - 172484221
15732