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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_172481706_172484125_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
172481706 - 172484125
Intron Length:
2420

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGGGCC
5'SS Class:
major
3'SS Sequence:
GCTTTATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTTTAT
U12 Branch Point Sequence:
TTTGCTTTATTT
Flanking Amino Acid:
AAAGGRRQRTGDLHKAHRSA
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1
62.8
37.8
Major BPS
66.1
0.4
1.3
59.6
46.8
Major PPT
84.1
0.77
0.8
81.1
35.5
Minor 5ss
25.5
-2.8
3.4
34
41.8
Minor BPS
65.7
0.57
1.7
83.14
39

Associated Gene:

Gene:
CEP57
Ensembl Gene ID:
ENSAPLG00000003812
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003939
172468490 - 172484221
15732