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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_172488672_172490599_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
172488672 - 172490599
Intron Length:
1928

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCACATATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
TTTCACATATTT
Flanking Amino Acid:
HHHRHSSSHHKISSLSPEQD
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
73.9
0.54
0.9
70.1
39.6
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
48.9
-0
2
75.77
40.6

Associated Gene:

Gene:
FAM76B
Ensembl Gene ID:
ENSAPLG00000003717
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003810
172484492 - 172494552
10061