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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_172490928_172491599_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
172490928 - 172491599
Intron Length:
672

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAAGTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTATTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TGTTTTCTATTT
Flanking Amino Acid:
KLESKPSNGDSSSINQSADS
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
78.1
32.2
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
86.6
0.82
0.7
85.7
27.6
Minor 5ss
39.7
-1.2
3.4
55.3
48.9
Minor BPS
49.5
0.05
1.9
72.55
39

Associated Gene:

Gene:
FAM76B
Ensembl Gene ID:
ENSAPLG00000003717
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003810
172484492 - 172494552
10061