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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_172491736_172493702_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
172491736 - 172493702
Intron Length:
1967

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACTTT
5'SS Class:
strong_major
3'SS Sequence:
CTTGTGTTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
CTTCACAGAACT
Flanking Amino Acid:
DQTILEKDKKLTELKADFQY
Intron Amino Acid Position:
283

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
81.2
33.8
Major BPS
77.5
0.68
1
79.6
33
Major PPT
79.2
0.66
0.9
76.9
37.3
Minor 5ss
49.1
-0.1
3
73.2
43.7
Minor BPS
48.7
-0
2
72.95
43

Associated Gene:

Gene:
FAM76B
Ensembl Gene ID:
ENSAPLG00000003717
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003810
172484492 - 172494552
10061