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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_172511418_172513650_F

Intron Information:

Intron Rank:
136459
Intron Class:
major
Intron Phase:
Intron Coordinates:
172511418 - 172513650
Intron Length:
2233

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGATCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAA
U12 Branch Point Sequence:
TGAAAATAAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.2
27.2
Major BPS
62
0.3
1
62.3
30.4
Major PPT
95.4
1.02
0.5
91.9
18.9
Minor 5ss
40.6
-1.1
3.1
57.4
46.8
Minor BPS
40.5
-0.7
2
49.99
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023525
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041119
172511264 - 172514805
3542