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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_172566574_172582888_R

Intron Information:

Intron Rank:
139358
Intron Class:
major
Intron Phase:
Intron Coordinates:
172566574 - 172582888
Intron Length:
16315

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTTTC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCCATTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TGTTTTCCATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
78.3
32.5
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
76.7
0.6
0.9
75.1
35
Minor 5ss
37.9
-1.4
3.2
51.5
45.7
Minor BPS
44
-0.3
2
64.97
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022443
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047938
172565242 - 172583522
18281