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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_172648066_172651075_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
172648066 - 172651075
Intron Length:
3010

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CCTTATTTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TTCTGCTAAATT
Flanking Amino Acid:
GPSAFIPENEVMQANGLDER
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
74.8
0.56
1
78.5
33.4
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
57.9
0.33
2.1
79.08
43.9

Associated Gene:

Gene:
SESN3
Ensembl Gene ID:
ENSAPLG00000003440
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046938
172625517 - 172661444
35928
ENSAPLT00000036246
172623325 - 172661444
38120
ENSAPLT00000003525
172623325 - 172661444
38120