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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_172654472_172656637_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
172654472 - 172656637
Intron Length:
2166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTGTG
5'SS Class:
major
3'SS Sequence:
TTCTTTTCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAGCAT
U12 Branch Point Sequence:
TTCTTTTCTACA
Flanking Amino Acid:
KKESLLVISGAFDDEIVSTD
Intron Amino Acid Position:
436

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
70.7
39.5
Major BPS
48.7
-0
1.4
57.8
39
Major PPT
91.8
0.94
0.6
87.6
22.9
Minor 5ss
42.5
-0.8
3.1
57.9
46.8
Minor BPS
50.1
-0
1.8
66.5
40.1

Associated Gene:

Gene:
SESN3
Ensembl Gene ID:
ENSAPLG00000003440
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046938
172625517 - 172661444
35928
ENSAPLT00000036246
172623325 - 172661444
38120
ENSAPLT00000003525
172623325 - 172661444
38120