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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_172656754_172659315_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
172656754 - 172659315
Intron Length:
2562

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCATCT
5'SS Class:
major
3'SS Sequence:
TCCTCTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAC
U12 Branch Point Sequence:
ATTTCTGTATTT
Flanking Amino Acid:
EDHLPTFRAQDYTWENHGFS
Intron Amino Acid Position:
475

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.2
66
40.7
Major BPS
68.7
0.46
1
71.3
34
Major PPT
82.3
0.73
0.7
76.8
25.2
Minor 5ss
44.7
-0.6
3.2
66
45.1
Minor BPS
52
0.14
2.2
77.64
39.7

Associated Gene:

Gene:
SESN3
Ensembl Gene ID:
ENSAPLG00000003440
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046938
172625517 - 172661444
35928
ENSAPLT00000036246
172623325 - 172661444
38120
ENSAPLT00000003525
172623325 - 172661444
38120