About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_172660044_172660826_F


Intron Information:

Intron Rank:
9

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
172660044 - 172660826

Intron Length:
783

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTACGTGTT

5'SS Class:
strong_major

3'SS Sequence:
TCATTTTTAACAG|G

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
ATTTCAT

U12 Branch Point Sequence:
TCATTTTTAACA

Flanking Amino Acid:
YWRQFKHSEKVHVNLLLMEA

Intron Amino Acid Position:
587

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
88.7
0.91
0.9
85.4
31.7

Major BPS
91.2
1.02
0.7
91.7
20.2

Major PPT
80.1
0.68
0.9
76.9
35.9

Minor 5ss
37.6
-1.4
3.6
57.9
46.7

Minor BPS
74.2
0.76
1.1
75.26
36.4

Associated Gene:

Gene:
SESN3

Ensembl Gene ID:

Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

172625517 - 172661444
35928

172623325 - 172661444
38120

172623325 - 172661444
38120