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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_172696644_172697632_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
172696644 - 172697632
Intron Length:
989

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
CTTGATTTTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
TTGCCCTTGATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
78.5
0.64
0.9
73.2
36.9
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
74.9
0.87
1.2
84.59
36.2

Associated Gene:

Gene:
CWC15
Ensembl Gene ID:
ENSAPLG00000003221
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003299
172696584 - 172712277
15694