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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_172699953_172700884_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
172699953 - 172700884
Intron Length:
932

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAACA
5'SS Class:
strong_major
3'SS Sequence:
TCCTGTCCCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
CTTTTTTTAATC
Flanking Amino Acid:
REKNRDRPTREHTTSSSVSK
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.8
31.6
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
71.4
0.48
0.8
69.5
31.3
Minor 5ss
33.1
-1.9
2.9
41.4
44.7
Minor BPS
74.8
0.76
1.1
77
33.7

Associated Gene:

Gene:
CWC15
Ensembl Gene ID:
ENSAPLG00000003221
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003299
172696584 - 172712277
15694