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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_172700974_172701514_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
172700974 - 172701514
Intron Length:
541

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTATGTATC
5'SS Class:
major
3'SS Sequence:
TTGTTGCTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATGAAT
U12 Branch Point Sequence:
AATGAATGAACT
Flanking Amino Acid:
NLDADDPLTDEDDEDEDLED
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
80
32.9
Major BPS
58
0.2
1.3
67.7
36.5
Major PPT
73.5
0.53
0.9
66.1
40.8
Minor 5ss
48.8
-0.1
2.5
67.5
36.5
Minor BPS
47
-0.1
2
67.37
42.3

Associated Gene:

Gene:
CWC15
Ensembl Gene ID:
ENSAPLG00000003221
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003299
172696584 - 172712277
15694