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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_172710854_172711480_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
172710854 - 172711480
Intron Length:
627

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGGTGC
5'SS Class:
major
3'SS Sequence:
TCTTTATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
ATTTCTTTATTT
Flanking Amino Acid:
QPQANFKVKRRWDDDVVFKN
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
64.8
42.3
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
90.5
0.91
0.7
88.8
26.9
Minor 5ss
35.7
-1.6
3.5
49.7
46.9
Minor BPS
71.8
0.76
1.5
85.98
34.4

Associated Gene:

Gene:
CWC15
Ensembl Gene ID:
ENSAPLG00000003221
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003299
172696584 - 172712277
15694