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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_172717317_172718922_R

Intron Information:

Intron Rank:
132750
Intron Class:
major
Intron Phase:
Intron Coordinates:
172717317 - 172718922
Intron Length:
1606

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
GTGTTTTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
CTCCTCTCATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
77.7
30.1
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
81.7
0.71
0.9
73.6
41.8
Minor 5ss
27.6
-2.6
3.3
39.2
46.2
Minor BPS
46.2
-0.2
1.8
60.64
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018659
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048475
172717260 - 172720579
3320
ENSAPLT00000035162
172717260 - 172720579
3320